STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114669238High mobility group protein HMGI-C-like. (111 aa)    
Predicted Functional Partners:
smad2
SMAD family member 2.
   
 0.780
smad3
SMAD family member 3.
   
 0.780
smad4
SMAD family member 4.
    
 0.754
LOC114646771
Mothers against decapentaplegic homolog 4-like.
    
 0.754
hmga1
High mobility group AT-hook 1.
  
 
0.686
smad9
SMAD family member 9.
   
 0.614
smad1
SMAD family member 1.
   
 0.614
LOC114660150
Mothers against decapentaplegic homolog 5.
   
 0.614
ENSECRP00000019819
annotation not available
      
 0.609
tp53
Tumor protein p53.
    
 0.561
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.