STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mst1Macrophage stimulating 1. (738 aa)    
Predicted Functional Partners:
met
MET proto-oncogene, receptor tyrosine kinase.
    
 0.974
egf
Epidermal growth factor.
    
 0.876
vegfa
Vascular endothelial growth factor A.
     
 0.862
pgf
Placental growth factor.
     
 0.856
vegfc
Vascular endothelial growth factor C.
     
 0.853
epha2
EPH receptor A2.
    
  0.848
pdgfrb
Platelet derived growth factor receptor beta.
     
 0.833
vegfd
Vascular endothelial growth factor D.
     
 0.832
pdgfb
Platelet derived growth factor subunit B.
     
 0.829
vegfb
Vascular endothelial growth factor B.
     
 0.824
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.