STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lhx5LIM homeobox 5. (398 aa)    
Predicted Functional Partners:
ccnk
Cyclin K.
    
   0.911
ldb1
LIM domain binding 1.
    
 0.666
ldb2
LIM domain binding 2.
    
 0.666
srf
Serum response factor.
    
 0.622
gata4
GATA binding protein 4.
    
 0.521
gata6
GATA binding protein 6.
    
 0.521
gata5
GATA binding protein 5.
    
 0.521
LOC114661326
GATA-binding factor 2-like.
    
 0.501
tcf4
Transcription factor 4.
    
  0.500
tcf3
Transcription factor 3.
    
  0.500
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.