STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
man1b1Mannosidase alpha class 1B member 1. (618 aa)    
Predicted Functional Partners:
mgat1
Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase.
     
 0.923
LOC114658016
Neutral alpha-glucosidase AB-like.
   
 
 0.922
man1c1
Mannosidase alpha class 1C member 1.
  
 
0.904
man1a1
Mannosidase alpha class 1A member 1.
  
 
0.889
man1a2
Mannosidase alpha class 1A member 2.
   
 
0.884
pgm3
Phosphoglucomutase 3.
     
 0.806
LOC114647329
SITS-binding protein-like.
   
 
 0.674
si
Sucrase-isomaltase.
   
 
 0.674
LOC114660909
Lysosomal alpha-glucosidase-like.
   
 
 0.674
ENSECRP00000016810
annotation not available
   
 
 0.674
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.