STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
clstn3Calsyntenin 3. (965 aa)    
Predicted Functional Partners:
lrrtm1
Leucine rich repeat transmembrane neuronal 1.
   
  
 0.603
erp27
Endoplasmic reticulum protein 27.
      
 0.560
telo2
Telomere maintenance 2.
      
 0.453
pex5
Peroxisomal biogenesis factor 5.
 
 
  
 0.440
igsf21
Immunoglobin superfamily member 21.
   
 
 0.431
s100b
S100 calcium binding protein B.
   
  
 0.430
hacd4
3-hydroxyacyl-CoA dehydratase 4.
      
 0.414
klc2
Kinesin light chain 2.
    
 
 0.412
LOC114646059
Uncharacterized LOC114646059.
    
 
 0.412
nphp3
Nephrocystin 3.
    
 
 0.412
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.