STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
thbs2Thrombospondin 2. (1191 aa)    
Predicted Functional Partners:
ENSECRP00000006939
annotation not available
   
 0.923
itgb5
Integrin subunit beta 5.
   
 0.890
itgb3
Integrin subunit beta 3.
   
 0.890
sdc1
Syndecan 1.
    
 0.888
itgb1
Integrin subunit beta 1.
   
 0.883
itgb4
Integrin subunit beta 4.
   
 0.882
ENSECRP00000025158
annotation not available
    
 0.879
itgb6
Integrin subunit beta 6.
    
 0.877
itgb7
Integrin subunit beta 7.
   
 0.877
itgb8
Integrin subunit beta 8.
    
 0.868
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.