STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSECRP00000029603annotation not available (605 aa)    
Predicted Functional Partners:
cacng1
Calcium voltage-gated channel auxiliary subunit gamma 1.
   
 
  0.713
gtf2a1
General transcription factor IIA subunit 1.
    
 
 0.583
kiaa0930
KIAA0930 ortholog.
      
 0.556
arpp19
cAMP regulated phosphoprotein 19.
      
 0.522
ENSECRP00000019765
annotation not available
      
 0.493
polr3b
RNA polymerase III subunit B.
    
 
 0.471
pmpcb
Peptidase, mitochondrial processing beta subunit.
    
 
 0.446
LOC114669206
Cytochrome b-c1 complex subunit 1, mitochondrial.
    
 
 0.446
ppp1r1b
Protein phosphatase 1 regulatory inhibitor subunit 1B.
      
 0.435
npas4
Neuronal PAS domain protein 4.
      
 0.428
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.