STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mib2Mindbomb E3 ubiquitin protein ligase 2. (950 aa)    
Predicted Functional Partners:
rps27a
Ribosomal protein S27a.
   
 0.998
traf7
TNF receptor associated factor 7.
    
 0.992
tradd
TNFRSF1A associated via death domain.
    
  0.978
ikbkb
Inhibitor of nuclear factor kappa B kinase subunit beta.
   
 0.946
tbk1
TANK binding kinase 1.
   
 0.946
ikbke
Inhibitor of nuclear factor kappa B kinase subunit epsilon.
   
 0.946
chuk
Component of inhibitor of nuclear factor kappa B kinase complex.
   
 0.946
fau
FAU ubiquitin like and ribosomal protein S30 fusion.
   
 0.936
LOC114666740
Ubiquitin-like protein FUBI.
   
 0.936
zfand4
Zinc finger AN1-type containing 4.
   
 0.921
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.