STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rad54lRAD54 like. (726 aa)    
Predicted Functional Partners:
ENSECRP00000014363
annotation not available
 
   
 0.941
leo1
LEO1 homolog, Paf1/RNA polymerase II complex component.
   
 0.938
ENSECRP00000007656
annotation not available
  
 
 0.912
rad51
RAD51 recombinase.
  
 
 0.912
vac14
VAC14 component of PIKFYVE complex.
 
  
   0.907
wrn
WRN RecQ like helicase.
  
 
 0.896
LOC114655846
DNA repair protein RAD51 homolog 4-like.
  
 
 0.886
fancm
FA complementation group M.
  
 0.883
fbh1
F-box DNA helicase 1.
   
 
 0.881
dmc1
DNA meiotic recombinase 1.
  
 
 0.876
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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