STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sigirrSingle Ig and TIR domain containing. (408 aa)    
Predicted Functional Partners:
unc79
Unc-79 homolog, NALCN channel complex subunit.
    
 0.858
leo1
LEO1 homolog, Paf1/RNA polymerase II complex component.
    
  0.836
LOC114650950
E3 SUMO-protein ligase RanBP2-like.
    
 0.731
myd88
MYD88 innate immune signal transduction adaptor.
    
 0.708
ENSECRP00000027989
annotation not available
    
  0.694
rims2
Regulating synaptic membrane exocytosis 2.
    
  0.694
LOC114649865
Interleukin-18 receptor 1-like.
   
 
0.654
ENSECRP00000000849
annotation not available
    
  0.648
rbbp5
RB binding protein 5, histone lysine methyltransferase complex subunit.
    
 0.641
ash2l
ASH2 like, histone lysine methyltransferase complex subunit.
    
 0.638
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.