STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ikzf3IKAROS family zinc finger 3. (552 aa)    
Predicted Functional Partners:
crbn
Cereblon.
    
 
 0.713
ddb1
Damage specific DNA binding protein 1.
    
 0.628
ENSECRP00000011256
annotation not available
    
  0.603
ENSECRP00000019751
annotation not available
    
 0.558
rad21
RAD21 cohesin complex component.
    
 0.558
ENSECRP00000000849
annotation not available
    
  0.527
ywhae
Tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon.
    
  0.515
gramd4
GRAM domain containing 4.
    
  0.470
pafah1b1
Platelet activating factor acetylhydrolase 1b regulatory subunit 1.
   
  0.469
spopl
Speckle type BTB/POZ protein like.
   
 0.465
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.