STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114665637Heme-binding protein 1-like. (245 aa)    
Predicted Functional Partners:
lyrm4
LYR motif containing 4.
   
 0.999
LOC114657772
Cytochrome b-c1 complex subunit Rieske, mitochondrial.
  
 0.999
LOC114660216
Cytochrome b-c1 complex subunit 8.
    
 0.999
ndufs8
NADH:ubiquinone oxidoreductase core subunit S8.
  
 0.999
LOC114659398
Cytochrome c1, heme protein, mitochondrial.
  
 0.999
ENSECRP00000020898
annotation not available
  
 0.999
LOC114661058
Cytochrome b-c1 complex subunit 2, mitochondrial.
    
 0.999
LOC114659175
Cytochrome b-c1 complex subunit 6, mitochondrial.
    
 0.999
LOC114668931
Cytochrome b-c1 complex subunit 9.
    
 0.999
LOC114663488
Cytochrome b-c1 complex subunit 7.
    
 0.999
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.