STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rfx7Regulatory factor X7. (1457 aa)    
Predicted Functional Partners:
rfxap
Regulatory factor X associated protein.
    
 0.903
chek2
Checkpoint kinase 2.
   
 0.891
rfxank
Regulatory factor X associated ankyrin containing protein.
    
 0.836
LOC114643508
Serine/threonine-protein kinase ATR-like.
    
 
 0.804
ankra2
Ankyrin repeat family A member 2.
   
 0.756
tonsl
Tonsoku like, DNA repair protein.
    
  0.680
dclk1
Doublecortin like kinase 1.
     
 0.667
btaf1
B-TFIID TATA-box binding protein associated factor 1.
    
   0.549
fam89b
Family with sequence similarity 89 member B.
      
 0.549
tm7sf3
Transmembrane 7 superfamily member 3.
      
 0.549
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.