STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
c17h15orf40Chromosome 17 C15orf40 homolog. (191 aa)    
Predicted Functional Partners:
rpp21
Ribonuclease P/MRP subunit p21.
   
 
  0.939
lsm2
LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated.
   
 
  0.938
snrpf
Small nuclear ribonucleoprotein polypeptide F.
   
 
  0.894
nhp2
NHP2 ribonucleoprotein.
   
 
  0.875
cs
Citrate synthase.
    
   0.827
pole2
DNA polymerase epsilon 2, accessory subunit.
    
   0.827
drg1
Developmentally regulated GTP binding protein 1.
    
   0.827
ENSECRP00000020973
annotation not available
   
 
  0.797
slc25a4
Solute carrier family 25 member 4.
    
   0.794
LOC114655588
Tricarboxylate transport protein, mitochondrial-like.
    
   0.794
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.