STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
blmBLM RecQ like helicase. (1470 aa)    
Predicted Functional Partners:
top3a
DNA topoisomerase III alpha.
  
 0.999
fancm
FA complementation group M.
   
 0.999
rmi1
RecQ mediated genome instability 1.
   
 0.998
rpa1
Replication protein A1.
   
 0.996
rmi2
RecQ mediated genome instability 2.
   
 0.992
rpa3
Replication protein A3.
    
 0.992
exo1
Exonuclease 1.
  
 0.988
fanca
FA complementation group A.
   
 
 0.977
top3b
DNA topoisomerase III beta.
  
 0.977
mus81
MUS81 structure-specific endonuclease subunit.
   
 0.974
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.