STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
colec10Collectin subfamily member 10. (270 aa)    
Predicted Functional Partners:
LOC114647755
Mannose-binding protein C-like.
   
 
0.736
colec12
Collectin subfamily member 12.
  
  
 
0.728
ENSECRP00000005269
annotation not available
  
  
0.718
LOC114664808
ficolin-1-B-like.
  
 
 0.688
LOC114657948
Complement C1r-A subcomponent-like.
    
 0.659
ENSECRP00000008917
annotation not available
    
 0.649
LOC114657949
Complement C1r subcomponent-like.
    
 0.649
c1s
Complement C1s.
    
 0.649
masp2
Mannan binding lectin serine peptidase 2.
    
 0.649
ENSECRP00000028617
annotation not available
    
 0.649
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.