STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dekDEK proto-oncogene. (373 aa)    
Predicted Functional Partners:
sf3b1
Splicing factor 3b subunit 1.
   
 
 0.961
upf1
UPF1 RNA helicase and ATPase.
    
 
 0.959
mybbp1a
MYB binding protein 1a.
     
 0.952
baz1b
Bromodomain adjacent to zinc finger domain 1B.
    
 0.951
ercc6
ERCC excision repair 6, chromatin remodeling factor.
    
 0.949
smarca5
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5.
   
 0.822
LOC114662119
Probable global transcription activator SNF2L1.
   
 0.822
ENSECRP00000015281
annotation not available
    
 
 0.818
baz1a
Bromodomain adjacent to zinc finger domain 1A.
    
 0.791
hells
Helicase, lymphoid specific.
   
 0.777
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.