STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114660777Neurotrophin-4-like. (117 aa)    
Predicted Functional Partners:
LOC114663558
Tumor necrosis factor receptor superfamily member 16-like.
    
 0.995
ngfr
Nerve growth factor receptor.
    
 0.974
ntrk1
Neurotrophic receptor tyrosine kinase 1.
    
 0.913
ntrk2
Neurotrophic receptor tyrosine kinase 2.
    
 0.913
ENSECRP00000030223
annotation not available
    
 0.913
ENSECRP00000030248
annotation not available
    
 0.913
bdnf
Brain derived neurotrophic factor.
    
0.894
met
MET proto-oncogene, receptor tyrosine kinase.
    
 0.873
ENSECRP00000022943
annotation not available
    
  0.871
tie1
Tyrosine kinase with immunoglobulin like and EGF like domains 1.
     
 0.847
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.