STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSECRP00000031189annotation not available (399 aa)    
Predicted Functional Partners:
ENSECRP00000022196
annotation not available
   
0.906
col6a1
Collagen type VI alpha 1 chain.
   
0.906
ENSECRP00000029231
annotation not available
 
      0.899
ENSECRP00000031205
annotation not available
 
      0.894
ENSECRP00000011256
annotation not available
    
  0.735
itgb6
Integrin subunit beta 6.
    
 0.718
itgb4
Integrin subunit beta 4.
    
 0.714
itgb8
Integrin subunit beta 8.
    
 0.712
ENSECRP00000025158
annotation not available
   
 0.704
ENSECRP00000033258
annotation not available
    
  0.698
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.