STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tbc1d25TBC1 domain family member 25. (902 aa)    
Predicted Functional Partners:
LOC114657981
Gamma-aminobutyric acid receptor-associated protein-like 1.
   
 0.812
gabarap
GABA type A receptor-associated protein.
   
 0.812
gabarapl2
GABA type A receptor associated protein like 2.
   
 0.812
rab33b
RAB33B, member RAS oncogene family.
     
 0.807
rab7b
RAB7B, member RAS oncogene family.
   
 0.786
map1lc3b
Microtubule associated protein 1 light chain 3 beta.
   
 0.780
map1lc3a
Microtubule associated protein 1 light chain 3 alpha.
   
 0.780
rab33a
RAB33A, member RAS oncogene family.
     
 0.755
armc5
Armadillo repeat containing 5.
   
 0.709
LOC114650910-2
Ras-related protein Rab-9A.
   
 0.709
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.