STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114667304Very long-chain acyl-CoA synthetase-like. (619 aa)    
Predicted Functional Partners:
bbs1
Bardet-Biedl syndrome 1.
   
 0.907
bbs7
Bardet-Biedl syndrome 7.
    
 0.902
ttc8
Tetratricopeptide repeat domain 8.
    
 0.891
bbs4
Bardet-Biedl syndrome 4.
   
 0.885
scp2
Sterol carrier protein 2.
   
 
 0.883
ENSECRP00000028328
annotation not available
   
 0.858
ENSECRP00000030458
annotation not available
   
 0.858
LOC114667325
Very long-chain acyl-CoA synthetase-like.
  
  
 
0.844
ENSECRP00000009294
annotation not available
    
 0.829
kdm6b
Lysine demethylase 6B.
    
 0.782
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.