STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
stx8Syntaxin 8. (238 aa)    
Predicted Functional Partners:
vti1a
Vesicle transport through interaction with t-SNAREs 1A.
   
 0.998
vamp8
Vesicle associated membrane protein 8.
    
 0.997
vti1b
Vesicle transport through interaction with t-SNAREs 1B.
   
 0.997
stx16
Syntaxin 16.
    
 0.994
stx18
Syntaxin 18.
   
 0.993
stx5
Syntaxin 5.
    
 0.993
ykt6
YKT6 v-SNARE homolog.
    
 0.991
gosr1
Golgi SNAP receptor complex member 1.
    
 0.990
vamp4
Vesicle associated membrane protein 4.
    
 0.990
vamp7
Vesicle associated membrane protein 7.
    
 0.989
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.