STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rcn2Reticulocalbin 2. (311 aa)    
Predicted Functional Partners:
LOC114667437
S phase cyclin A-associated protein in the endoplasmic reticulum-like.
      
 0.542
LOC114659794
Calreticulin-like.
   
 
 0.526
calr3
Calreticulin 3.
   
 
 0.526
tspan3
Tetraspanin 3.
   
  
 0.522
aspm
Abnormal spindle microtubule assembly.
    
 
 0.497
stk40
Serine/threonine kinase 40.
    
 
 0.483
dnajc10
DnaJ heat shock protein family (Hsp40) member C10.
   
 
 0.479
LOC114667490
Inactive tyrosine-protein kinase PEAK1-like.
      
 0.447
hsp90b1
Heat shock protein 90 beta family member 1.
   
  0.431
tmbim4
Transmembrane BAX inhibitor motif containing 4.
      
 0.428
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.