STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sdc2Syndecan 2. (216 aa)    
Predicted Functional Partners:
sdc1
Syndecan 1.
  
  
 
0.857
LOC114659403
Syndecan-4-like.
  
  
 
0.850
tgfb1
Transforming growth factor beta 1.
     
 0.690
rdx
Radixin.
     
 0.647
msn
Moesin.
     
 0.647
ezr
Ezrin.
     
 0.647
dcn
Decorin.
   
 
 0.618
agrn
Agrin.
     
 0.543
egflam
EGF like, fibronectin type III and laminin G domains.
     
 0.480
hspg2
Heparan sulfate proteoglycan 2.
     
 0.452
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.