STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
vps26bVPS26, retromer complex component B. (333 aa)    
Predicted Functional Partners:
vps35
VPS35 retromer complex component.
   
 0.998
vps29
VPS29 retromer complex component.
   
 0.997
snx27
Sorting nexin 27.
   
 0.993
vps26a
VPS26, retromer complex component A.
  
 
0.987
snx8
Sorting nexin 8.
    
 0.979
tbc1d5
TBC1 domain family member 5.
   
 0.979
snx3
Sorting nexin 3.
   
 0.971
snx12
Sorting nexin 12.
   
 0.971
snx2
Sorting nexin 2.
   
 0.970
LOC114667428
Sorting nexin-1-like.
   
 0.970
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.