STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
barx1BARX homeobox 1. (248 aa)    
Predicted Functional Partners:
ercc4
ERCC excision repair 4, endonuclease catalytic subunit.
     
 0.583
isl1
ISL LIM homeobox 1.
   
 
 0.519
isl2
ISL LIM homeobox 2.
   
 
 0.519
nkx3-2
NK3 homeobox 2.
   
  
0.473
ENSECRP00000001997
annotation not available
   
 
0.468
foxf2
Forkhead box F2.
    
 
 0.467
msx1
Msh homeobox 1.
   
  
0.445
tbx22
T-box transcription factor 22.
   
 
 0.440
alx4
ALX homeobox 4.
   
 
0.439
LOC114649966
Secreted frizzled-related protein 2-like.
   
 
 0.434
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.