STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
phf2PHD finger protein 2. (1036 aa)    
Predicted Functional Partners:
skp1
S-phase kinase associated protein 1.
    
 0.853
yaf2
YY1 associated factor 2.
    
 0.845
LOC114651456
E3 ubiquitin-protein ligase RING2-A-like.
    
 0.779
rnf2
Ring finger protein 2.
    
 0.779
suv39h1
Suppressor of variegation 3-9 homolog 1.
    
 0.737
suz12
SUZ12 polycomb repressive complex 2 subunit.
    
 0.688
rbbp5
RB binding protein 5, histone lysine methyltransferase complex subunit.
    
 0.686
sirt1
Sirtuin 1.
    
 0.665
ash2l
ASH2 like, histone lysine methyltransferase complex subunit.
    
 0.654
eed
Embryonic ectoderm development.
    
 0.650
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.