STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lin7cLin-7 homolog C, crumbs cell polarity complex component. (234 aa)    
Predicted Functional Partners:
cask
Calcium/calmodulin dependent serine protein kinase.
    
 0.999
mocs3
Molybdenum cofactor synthesis 3.
    
 0.955
prdx5
Peroxiredoxin 5.
   
 0.948
lin7a
Lin-7 homolog A, crumbs cell polarity complex component.
  
  
 
0.932
lin7b
Lin-7 homolog B, crumbs cell polarity complex component.
  
  
 
0.931
mpp1
Membrane palmitoylated protein 1.
    
 0.916
mpp5
Membrane palmitoylated protein 5.
    
 0.864
camk2b
Calcium/calmodulin dependent protein kinase II beta.
    
 0.838
camk2d
Calcium/calmodulin dependent protein kinase II delta.
    
 0.838
mpp2
Membrane palmitoylated protein 2.
    
 0.838
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.