STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
brd4Bromodomain containing 4. (1478 aa)    
Predicted Functional Partners:
dmap1
DNA methyltransferase 1 associated protein 1.
    
 0.911
cdk9
Cyclin dependent kinase 9.
    
 0.905
ruvbl2
RuvB like AAA ATPase 2.
    
 0.890
ruvbl1
RuvB like AAA ATPase 1.
    
 0.887
taf7l
TATA-box binding protein associated factor 7 like.
    
 0.867
yeats4
YEATS domain containing 4.
    
 0.847
leo1
LEO1 homolog, Paf1/RNA polymerase II complex component.
    
 0.845
cfdp1
Craniofacial development protein 1.
    
 0.813
tep1
Telomerase associated protein 1.
    
  0.795
tep1-2
Telomerase associated protein 1.
    
  0.795
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.