STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pygbGlycogen phosphorylase B. (840 aa)    
Predicted Functional Partners:
gbe1
1,4-alpha-glucan branching enzyme 1.
  
 0.985
agl
Amylo-alpha-1, 6-glucosidase, 4-alpha-glucanotransferase.
  
 0.982
pgm1
Phosphoglucomutase 1.
  
 
 0.967
otc
Ornithine carbamoyltransferase.
  
 
 0.966
LOC114654681
Phosphoglucomutase-like protein 5.
  
 
 0.942
gys2
Glycogen synthase 2.
  
 0.924
LOC114642649
Glycogen [starch] synthase, muscle-like.
  
 0.924
LOC114658950
Pancreatic alpha-amylase-like.
  
 0.909
ENSECRP00000004184
annotation not available
  
 
 0.889
calml6
Calmodulin like 6.
   
 0.867
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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