STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
usb1U6 snRNA biogenesis phosphodiesterase 1. (286 aa)    
Predicted Functional Partners:
prpf19
pre-mRNA processing factor 19.
    
   0.942
xab2
XPA binding protein 2.
    
 
 0.817
plrg1
Pleiotropic regulator 1.
    
   0.782
gpatch1
G-patch domain containing 1.
    
   0.705
snw1
SNW domain containing 1.
    
 
 0.694
ppie
Peptidylprolyl isomerase E.
    
   0.686
dhx35
DEAH-box helicase 35.
    
   0.663
bcas2
BCAS2 pre-mRNA processing factor.
    
   0.663
ENSECRP00000003841
annotation not available
    
   0.657
cdc5l
Cell division cycle 5 like.
    
   0.654
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.