STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114658792Histone H4. (103 aa)    
Predicted Functional Partners:
hat1
Histone acetyltransferase 1.
    
 0.766
arid4a
AT-rich interaction domain 4A.
    
 0.759
arid4b
AT-rich interaction domain 4B.
    
 0.759
mysm1
Myb like, SWIRM and MPN domains 1.
    
 0.751
kdm6b
Lysine demethylase 6B.
    
 0.743
kdm6a
Lysine demethylase 6A.
    
 0.743
orc1
Origin recognition complex subunit 1.
    
 0.719
rps27a
Ribosomal protein S27a.
   
 0.716
rbbp4
RB binding protein 4, chromatin remodeling factor.
    
 0.714
LOC114641485
Histone-binding protein RBBP7.
    
 0.714
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.