STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114658774Histone H3. (136 aa)    
Predicted Functional Partners:
kdm6b
Lysine demethylase 6B.
   
 0.876
kdm6a
Lysine demethylase 6A.
   
 0.876
arid4a
AT-rich interaction domain 4A.
   
 0.790
arid4b
AT-rich interaction domain 4B.
   
 0.790
hat1
Histone acetyltransferase 1.
    
 0.760
LOC114648650
Histone H2A.V.
   
 0.754
LOC114654554
Histone H2A.Z.
   
 0.754
mphosph8
M-phase phosphoprotein 8.
    
 0.751
LOC114642218
Histone-lysine N-methyltransferase SETD2-like.
    
 0.751
dot1l
DOT1 like histone lysine methyltransferase.
   
 0.750
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.