STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
crabp1Cellular retinoic acid binding protein 1. (137 aa)    
Predicted Functional Partners:
ENSECRP00000021974
annotation not available
     
 0.713
fabp2
Fatty acid binding protein 2.
  
  
0.691
ENSECRP00000013478
annotation not available
     
0.675
ppard
Peroxisome proliferator activated receptor delta.
    
 0.599
rarg
Retinoic acid receptor gamma.
    
 0.573
rarb
Retinoic acid receptor beta.
    
 0.573
rara
Retinoic acid receptor alpha.
    
 0.573
LOC114645233
Fatty acid-binding protein, intestinal-like.
  
  
 
0.548
LOC114651640
Cytochrome P450 26B1.
   
 
 0.543
LOC114651509
Retinoic acid receptor RXR-beta-A-like.
    
 0.535
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.