LOC114667426 protein (Erpetoichthys calabaricus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC114667426

AP-3 complex subunit beta-2. (435 aa)

Predicted Functional Partners:

ENSECRP00000001571

0.984

gak

0.984

ap3d1

0.974

ap3m2

0.961

ap3m1

0.961

ap3s1

0.953

ap3s2

0.953

LOC114645052

0.917

ap4e1

0.916

LOC114660664

0.913

Your Current Organism:

Erpetoichthys calabaricus

NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSECRP00000001571	LOC114645052	ENSECRP00000001571	ENSECRP00000023859	annotation not available	AP-3 complex subunit beta-2-like.	0.984
ENSECRP00000001571	LOC114660664	ENSECRP00000001571	ENSECRP00000013768	annotation not available	AP-2 complex subunit alpha-2-like.	0.997
ENSECRP00000001571	LOC114667426	ENSECRP00000001571	ENSECRP00000032475	annotation not available	AP-3 complex subunit beta-2.	0.984
ENSECRP00000001571	ap3d1	ENSECRP00000001571	ENSECRP00000024940	annotation not available	Adaptor related protein complex 3 subunit delta 1.	0.994
ENSECRP00000001571	ap3s1	ENSECRP00000001571	ENSECRP00000008017	annotation not available	Adaptor related protein complex 3 subunit sigma 1.	0.990
ENSECRP00000001571	ap3s2	ENSECRP00000001571	ENSECRP00000027325	annotation not available	Adaptor related protein complex 3 subunit sigma 2.	0.990
ENSECRP00000001571	ap4e1	ENSECRP00000001571	ENSECRP00000026581	annotation not available	Adaptor related protein complex 4 subunit epsilon 1.	0.994
ENSECRP00000001571	gak	ENSECRP00000001571	ENSECRP00000022999	annotation not available	Cyclin G associated kinase.	0.999
LOC114645052	ENSECRP00000001571	ENSECRP00000023859	ENSECRP00000001571	AP-3 complex subunit beta-2-like.	annotation not available	0.984
LOC114645052	LOC114660664	ENSECRP00000023859	ENSECRP00000013768	AP-3 complex subunit beta-2-like.	AP-2 complex subunit alpha-2-like.	0.913
LOC114645052	LOC114667426	ENSECRP00000023859	ENSECRP00000032475	AP-3 complex subunit beta-2-like.	AP-3 complex subunit beta-2.	0.917
LOC114645052	ap3d1	ENSECRP00000023859	ENSECRP00000024940	AP-3 complex subunit beta-2-like.	Adaptor related protein complex 3 subunit delta 1.	0.974
LOC114645052	ap3m1	ENSECRP00000023859	ENSECRP00000032477	AP-3 complex subunit beta-2-like.	Adaptor related protein complex 3 subunit mu 1.	0.961
LOC114645052	ap3m2	ENSECRP00000023859	ENSECRP00000000281	AP-3 complex subunit beta-2-like.	Adaptor related protein complex 3 subunit mu 2.	0.961
LOC114645052	ap3s1	ENSECRP00000023859	ENSECRP00000008017	AP-3 complex subunit beta-2-like.	Adaptor related protein complex 3 subunit sigma 1.	0.953
LOC114645052	ap3s2	ENSECRP00000023859	ENSECRP00000027325	AP-3 complex subunit beta-2-like.	Adaptor related protein complex 3 subunit sigma 2.	0.953
LOC114645052	ap4e1	ENSECRP00000023859	ENSECRP00000026581	AP-3 complex subunit beta-2-like.	Adaptor related protein complex 4 subunit epsilon 1.	0.916
LOC114645052	gak	ENSECRP00000023859	ENSECRP00000022999	AP-3 complex subunit beta-2-like.	Cyclin G associated kinase.	0.984
LOC114660664	ENSECRP00000001571	ENSECRP00000013768	ENSECRP00000001571	AP-2 complex subunit alpha-2-like.	annotation not available	0.997
LOC114660664	LOC114645052	ENSECRP00000013768	ENSECRP00000023859	AP-2 complex subunit alpha-2-like.	AP-3 complex subunit beta-2-like.	0.913