STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
doc2aDouble C2 domain alpha. (432 aa)    
Predicted Functional Partners:
rab3c
RAB3C, member RAS oncogene family.
   
 
 0.564
rab3b
RAB3B, member RAS oncogene family.
   
 
 0.564
rab3a
RAB3A, member RAS oncogene family.
   
 
 0.564
rab3d
RAB3D, member RAS oncogene family.
   
 
 0.564
rab27b
RAB27B, member RAS oncogene family.
    
 
 0.559
rab27a
RAB27A, member RAS oncogene family.
    
 
 0.559
rph3al
Rabphilin 3A like (without C2 domains).
 
      0.532
snap25
Synaptosome associated protein 25.
   
 
 0.507
ENSECRP00000033659
annotation not available
   
 
 0.507
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.