STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tlk2Tousled like kinase 2. (695 aa)    
Predicted Functional Partners:
LOC114659219
Histone chaperone ASF1A-like.
    
 
 0.855
asf1b
Anti-silencing function 1B histone chaperone.
    
 
 0.855
cabin1
Calcineurin binding protein 1.
    
 
 0.601
ythdc2
YTH domain containing 2.
   
   0.512
LOC114669276
Protein HIRA.
    
 
 0.458
dhx16
DEAH-box helicase 16.
   
 
 0.452
smpd2
Sphingomyelin phosphodiesterase 2.
      
 0.428
prim1
DNA primase subunit 1.
      
 0.418
tbccd1
TBCC domain containing 1.
      
 0.410
LOC114650549
valine--tRNA ligase-like.
      
 0.406
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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