STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
snrpfSmall nuclear ribonucleoprotein polypeptide F. (86 aa)    
Predicted Functional Partners:
snrpd2
Small nuclear ribonucleoprotein D2 polypeptide.
   
 0.999
snrpg
Small nuclear ribonucleoprotein polypeptide G.
   
 0.999
lsm2
LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated.
   
 0.999
sart1
Spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP.
    
 0.999
crnkl1
Crooked neck pre-mRNA splicing factor 1.
    
 0.999
snrpc
Small nuclear ribonucleoprotein polypeptide C.
   
 0.999
snrpe
Small nuclear ribonucleoprotein polypeptide E.
   
 0.999
lsm5
LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated.
   
 0.999
cdc40
Cell division cycle 40.
   
 0.999
snrnp200
Small nuclear ribonucleoprotein U5 subunit 200.
   
 0.999
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.