STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rhofRas homolog family member F, filopodia associated. (210 aa)    
Predicted Functional Partners:
itsn2
Intersectin 2.
    
 0.998
itsn1
Intersectin 1.
    
 0.969
ENSECRP00000011256
annotation not available
   
 0.882
ENSECRP00000023353
annotation not available
    
 0.853
myo9a
Myosin IXA.
    
 0.853
trio
Trio Rho guanine nucleotide exchange factor.
   
 0.837
LOC114652087
Collagen alpha-1(I) chain-like.
   
 0.837
shank3
SH3 and multiple ankyrin repeat domains 3.
   
  0.836
ENSECRP00000015699
annotation not available
   
  0.836
ENSECRP00000021547
annotation not available
   
  0.836
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.