STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ptpmt1Protein tyrosine phosphatase mitochondrial 1. (184 aa)    
Predicted Functional Partners:
ndufs3
NADH:ubiquinone oxidoreductase core subunit S3.
 
 
 
 0.632
tamm41
TAM41 mitochondrial translocator assembly and maintenance homolog.
      
 0.575
pgs1
Phosphatidylglycerophosphate synthase 1.
      
 0.551
crls1
Cardiolipin synthase 1.
      
 0.499
LOC114660501
Tafazzin-like.
      
 0.472
acp1
Acid phosphatase 1.
      
 0.441
mrps7
Mitochondrial ribosomal protein S7.
   
    0.433
atpaf1
ATP synthase mitochondrial F1 complex assembly factor 1.
      
 0.428
dolpp1
Dolichyldiphosphatase 1.
      
 0.426
ENSECRP00000006501
annotation not available
   
  
 0.418
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.