STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dcp1aDecapping mRNA 1A. (361 aa)    
Predicted Functional Partners:
xrn1
5'-3' exoribonuclease 1.
    
 0.994
dcp2
Decapping mRNA 2.
    
 0.991
edc3
Enhancer of mRNA decapping 3.
   
 0.987
edc4
Enhancer of mRNA decapping 4.
    
 0.982
dcp1b
Decapping mRNA 1B.
 
  
 0.969
ddx6
DEAD-box helicase 6.
   
 0.962
LOC114668158
Probable ATP-dependent RNA helicase ddx6.
   
 0.962
patl1
PAT1 homolog 1, processing body mRNA decay factor.
    
 0.952
patl2
PAT1 homolog 2.
    
 0.952
ENSECRP00000022437
annotation not available
    
 0.945
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.