STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hacd33-hydroxyacyl-CoA dehydratase 3. (360 aa)    
Predicted Functional Partners:
LOC114658955
Very-long-chain enoyl-CoA reductase-like.
   
 0.978
tecr
trans-2,3-enoyl-CoA reductase.
   
 0.978
hsd17b12
Hydroxysteroid 17-beta dehydrogenase 12.
   
 0.949
LOC114648892
Very-long-chain 3-oxoacyl-CoA reductase-B-like.
   
 0.938
ENSECRP00000011177
annotation not available
   
 0.938
skp1
S-phase kinase associated protein 1.
    
 0.920
hsdl1
Hydroxysteroid dehydrogenase like 1.
   
 0.890
hsd17b3
Hydroxysteroid 17-beta dehydrogenase 3.
   
 0.890
ENSECRP00000012373
annotation not available
    
 0.882
elovl1
ELOVL fatty acid elongase 1.
    
 0.871
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.