STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
echs1enoyl-CoA hydratase, short chain 1. (275 aa)    
Predicted Functional Partners:
hadh
hydroxyacyl-CoA dehydrogenase.
 0.997
hsd17b10
Hydroxysteroid 17-beta dehydrogenase 10.
   
 0.983
acadsb
acyl-CoA dehydrogenase short/branched chain.
  
 0.975
acads
acyl-CoA dehydrogenase short chain.
  
 0.975
acox1
acyl-CoA oxidase 1.
  
 0.966
acox3
acyl-CoA oxidase 3, pristanoyl.
  
 0.965
acadm
acyl-CoA dehydrogenase medium chain.
  
 0.964
acaa2
acetyl-CoA acyltransferase 2.
  
 0.959
gcdh
glutaryl-CoA dehydrogenase.
  
 0.954
acadvl
acyl-CoA dehydrogenase very long chain.
  
 0.943
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.