STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hoxb7Homeobox B7. (240 aa)    
Predicted Functional Partners:
hoxb6
Homeobox B6.
  
 
0.987
hoxb5
Homeobox B5.
   
 
0.954
hoxc6
Homeobox C6.
   
 
0.849
hoxd4
Homeobox D4.
   
 
0.820
hoxb4
Homeobox B4.
  
 
0.811
hoxc4
Homeobox C4.
   
 
0.786
ENSECRP00000012004
annotation not available
   
 
0.753
hoxc5
Homeobox C5.
   
  
0.746
pbx2
PBX homeobox 2.
    
 0.738
nr5a2
Nuclear receptor subfamily 5 group A member 2.
    
 0.738
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.