STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
wdr6WD repeat domain 6. (1113 aa)    
Predicted Functional Partners:
ftsj1
FtsJ RNA 2'-O-methyltransferase 1.
   
 
 0.989
cops5
COP9 signalosome subunit 5.
   
  0.942
grb2
Growth factor receptor bound protein 2.
    
 0.938
cops6
COP9 signalosome subunit 6.
   
  0.935
hspa5
Heat shock protein family A (Hsp70) member 5.
   
  0.935
stoml2
Stomatin like 2.
    
  0.934
nckipsd
NCK interacting protein with SH3 domain.
     
 0.930
utp18
UTP18 small subunit processome component.
   
  0.925
mrm2
Mitochondrial rRNA methyltransferase 2.
   
 
 0.918
utp15
UTP15 small subunit processome component.
   
 
  0.918
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.