STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114662891GRAM domain-containing protein 2A-like. (435 aa)    
Predicted Functional Partners:
mpzl2
Myelin protein zero like 2.
    
 0.769
scn2b
Sodium voltage-gated channel beta subunit 2.
    
 0.769
scn4b
Sodium voltage-gated channel beta subunit 4.
    
 0.692
scn3b
Sodium voltage-gated channel beta subunit 3.
     
 0.563
cacna1s
Calcium voltage-gated channel subunit alpha1 S.
    
  0.490
ttc21a
Tetratricopeptide repeat domain 21A.
    
  0.490
LOC114659767
Voltage-dependent R-type calcium channel subunit alpha-1E-like.
    
  0.490
LOC114653135
Sodium channel protein type 4 subunit alpha-like.
    
  0.490
cacna1f
Calcium voltage-gated channel subunit alpha1 F.
    
  0.490
ttc21b
Tetratricopeptide repeat domain 21B.
    
  0.490
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.