STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
raraRetinoic acid receptor alpha. (456 aa)    
Predicted Functional Partners:
med1
Mediator complex subunit 1.
    
 0.845
rxra
Retinoid X receptor alpha.
   
0.841
LOC114651509
Retinoic acid receptor RXR-beta-A-like.
   
0.827
LOC114658988
Retinoic acid receptor RXR-gamma-B-like.
   
0.827
nr1d2
Nuclear receptor subfamily 1 group D member 2.
   
0.800
ENSECRP00000013617
annotation not available
    
 0.798
ENSECRP00000013662
annotation not available
    
 0.798
ncor2
Nuclear receptor corepressor 2.
    
 0.798
zbtb16
Zinc finger and BTB domain containing 16.
    
 0.727
ENSECRP00000026178
annotation not available
    
 0.727
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.