STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cacng6Calcium voltage-gated channel auxiliary subunit gamma 6. (262 aa)    
Predicted Functional Partners:
cacng1
Calcium voltage-gated channel auxiliary subunit gamma 1.
   
 
 
0.934
cachd1
Cache domain containing 1.
     
 0.896
ENSECRP00000024873
annotation not available
     
 0.849
LOC114666865
Voltage-dependent calcium channel gamma-4 subunit-like.
 
  
  0.837
cacna1b
Calcium voltage-gated channel subunit alpha1 B.
   
 
 0.828
cacnb2
Calcium voltage-gated channel auxiliary subunit beta 2.
     
 0.827
cacna1a
Calcium voltage-gated channel subunit alpha1 A.
     
 0.823
LOC114659767
Voltage-dependent R-type calcium channel subunit alpha-1E-like.
     
 0.822
cacnb4
Calcium voltage-gated channel auxiliary subunit beta 4.
     
 0.820
cacna2d3
Calcium voltage-gated channel auxiliary subunit alpha2delta 3.
     
 0.786
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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