STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rab7aRAB7A, member RAS oncogene family. (207 aa)    
Predicted Functional Partners:
LOC114662096
Rab proteins geranylgeranyltransferase component A 2-like.
    
 0.982
vps35
VPS35 retromer complex component.
   
 0.978
vps26a
VPS26, retromer complex component A.
    
 0.976
vps29
VPS29 retromer complex component.
    
 0.969
vps26b
VPS26, retromer complex component B.
    
 0.956
LOC114655629
RILP-like protein 1.
    
 0.949
ccz1
CCZ1 homolog, vacuolar protein trafficking and biogenesis associated.
    
 0.942
dctn1
Dynactin subunit 1.
     
 0.930
ankfy1
Ankyrin repeat and FYVE domain containing 1.
     
 0.930
snx8
Sorting nexin 8.
    
 0.926
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.