STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gata2GATA binding protein 2. (458 aa)    
Predicted Functional Partners:
tbx21
T-box transcription factor 21.
   
 0.900
arid4a
AT-rich interaction domain 4A.
   
 0.884
arid4b
AT-rich interaction domain 4B.
   
 0.884
tal1
TAL bHLH transcription factor 1, erythroid differentiation factor.
   
 0.846
lmo2
LIM domain only 2.
    
 0.834
runx1
RUNX family transcription factor 1.
    
 0.818
ldb1
LIM domain binding 1.
    
 0.810
srf
Serum response factor.
    
 0.792
ep300
E1A binding protein p300.
    
 0.790
zfpm1
Zinc finger protein, FOG family member 1.
    
 0.786
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.